ONCOMINE | Tool name | ONCOMINE |
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| URL | https://www.oncomine.org |
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| Important features | A cancer microarray database and web-based data mining platform providing gene expression and DNA copy number data. Oncomine provides differentially expressed genes across multiple experiments for various cancers, drug sensitivity, etc. It provides co-expressed genes for a queried gene. The database also has integrated pathways and Gene Ontology annotations. |
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| Citations | Rhodes DR, Yu J, Shanker K, Deshpande N, Varambally R, Ghosh D, Barrette T, Pandey A, Chinnaiyan AM. ONCOMINE: a cancer microarray database and integrated data-mining platform. Neoplasia. 2004 Jan-Feb;6(1):1-6. PubMed PMID: 15068665; PubMed Central PMCID: PMC1635162. |
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| Year of publication | 2004 |
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| Rank by usage frequency | 97 |
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| Comments | The Oncomine Research Edition, requires login to access and is free for academic and nonprofit organizations. Oncomine Research Premium Edition is a paid-version and provides extra features such as enrichment of user defined gene signatures, export and share results, upload custom concepts. |
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| Function | Microarray, Human |
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| Category | Online, Register, Free, Paid |
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| Working status | Functional |
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| Other features | |
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| Other citations | Rhodes DR, Kalyana-Sundaram S, Mahavisno V, Varambally R, Yu J, Briggs BB, Barrette TR, Anstet MJ, Kincead-Beal C, Kulkarni P, Varambally S, Ghosh D, Chinnaiyan AM. Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles. Neoplasia. 2007 Feb;9(2):166-80. PubMed PMID: 17356713; PubMed Central PMCID: PMC1813932. |
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